grit-rename

Tool to rename TPF/AGP/FASTA files based on a mapping

Usage

Usage: grit-rename --map MAPPINGs --fasta FASTAFILE --outdir OUTDIR --tpf TPFFILE

• -m MAPPINGs, --map=MAPPINGS mappings TSV file FROMTO
• -f FASTAFILE, --fasta=FASTAFILE FASTA FILE to rename
• -t TPFFILE, --tpf=TPFFILE TPF FILE to RENAME
• -o OUTDIR, --outdir=OUTDIR directory for the renamed files
• -h, --help Show this help

Contributing

1. Fork it (https://github.com/your-github-user/grit-rename/fork)
2. Create your feature branch (git checkout -b my-new-feature)
3. Commit your changes (git commit -am 'Add some feature')
4. Push to the branch (git push origin my-new-feature)
5. Create a new Pull Request

Contributors

• epaule - creator and maintainer