vcftools v0.1.9

Crystal shard for parsing VCF files

VCFTools

VCFTools is a Crystal shard for parsing VCF files. VCF is the main format used to store genomic variation in humans and other species.

Installation

Add this to your application's shard.yml:

dependencies:
  VCF_tools:
    github: diploidgenomics/vcftools

Usage

require "VCF_tools"

VCFTools::Vcf.new(file_path).each_variant do |v|
  puts "#{v.chromosome}:#{v.position}"
end

Development

TODO: Write development instructions here

Contributing

  1. Fork it (https://github.com/diploidgenomics/vcftools/fork)
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request

Contributors

Github statistic:
  • 2
  • 0
  • 0
  • 1
  • 0
  • 8 days ago

License:

MIT License

Links: